Genome Meta Information: Ureaplasma parvum 106 (GCA_006716515.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006716515.1 | ||
| HOMD Taxon-ID | HMT-0799 | ||
| Species Name (in use by HOMD) | Ureaplasma parvum | ||
| Organism Name (as deposited) | HMT-799 Ureaplasma parvum 106 | ||
| Strain or Isolate | 106 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmoidaceae;g__Ureaplasma; s__Ureaplasma parvum |
||
| Sequencing Technology | Illumina NextSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 741,809 (bp) | ||
| GC Percentage | 25.53 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/716/515/GCA_006716515.1_ASM671651v1 | ||
| CDS | 1248 | ||
| Genes | 1289 | ||
| mRNA | 1289 | ||
| misc RNA | 4 | ||
| rRNA | 6 | ||
| tRNA | 30 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.57 % | ||
| CheckM Completeness | 98.46 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM671651v1 |
| GenBank Assembly Accession | GCA_006716515.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006716515.1 [NCBI] |
| BioSample | SAMN12061317 [NCBI] |
| BioProject | PRJNA548992 [NCBI] |
| Submitter | Sir Run Run Shaw Hospital, Zhejiang University School of Medicine |
| Submission Date | 2019-06-15T07:08:05.383 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 134821 |
| Isolation Source | semen |
| Geo Location | China: Hangzhou |
