Genome Meta Information: Streptococcus agalactiae PLGBS13 (GCA_006874565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_006874565.1 | ||
| HOMD Taxon-ID | HMT-0537 | ||
| Species Name (in use by HOMD) | Streptococcus agalactiae | ||
| Organism Name (as deposited) | HMT-537 Streptococcus agalactiae PLGBS13 | ||
| Strain or Isolate | PLGBS13 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus agalactiae |
||
| Sequencing Technology | 454 Roche & Illumina Misq | ||
| Genome Coverage | 120 | ||
| Contigs |
|
||
| Total Sequence Length | 2,095,031 (bp) | ||
| GC Percentage | 35.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/874/565/GCA_006874565.1_ASM687456v1 | ||
| CDS | 2021 | ||
| Genes | 2167 | ||
| mRNA | 2167 | ||
| misc RNA | 44 | ||
| rRNA | 21 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.12 % | ||
| CheckM Completeness | 99.43 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM687456v1 |
| GenBank Assembly Accession | GCA_006874565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_006874565.1 [NCBI] |
| BioSample | SAMN09267180 [NCBI] |
| BioProject | PRJNA473176 [NCBI] |
| Submitter | University of Alberta |
| Submission Date | 2018-05-25T18:19:05.157 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1311 |
| Isolation Source | Soft tissue wound |
| Geo Location | Canada: Alberta |
