Genome Meta Information: Staphylococcus hominis SDA3 (GCA_007004175.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007004175.1 | ||
| HOMD Taxon-ID | HMT-0127 | ||
| Species Name (in use by HOMD) | Staphylococcus hominis | ||
| Organism Name (as deposited) | HMT-127 Staphylococcus hominis SDA3 | ||
| Strain or Isolate | SDA3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus hominis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 271 | ||
| Contigs |
|
||
| Total Sequence Length | 2,289,009 (bp) | ||
| GC Percentage | 31.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/175/GCA_007004175.1_ASM700417v1 | ||
| CDS | 2256 | ||
| Genes | 2380 | ||
| mRNA | 2380 | ||
| misc RNA | 57 | ||
| rRNA | 6 | ||
| tRNA | 60 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.07 % | ||
| CheckM Completeness | 91.35 % | ||
| CheckM Contamination | 5.37 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM700417v1 |
| GenBank Assembly Accession | GCA_007004175.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007004175.1 [NCBI] |
| BioSample | SAMN12211901 [NCBI] |
| BioProject | PRJNA552487 [NCBI] |
| Submitter | University of New Hampshire |
| Submission Date | 2019-07-03T12:28:04.350 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VJML01 |
| NCBI TaxID | 1290 |
| Isolation Source | desert soil |
| Geo Location | USA: New Mexico, Sevilleta Des |
