Genome Meta Information: Staphylococcus hominis SDC3 (GCA_007004245.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007004245.1 | ||
| HOMD Taxon-ID | HMT-0127 | ||
| Species Name (in use by HOMD) | Staphylococcus hominis | ||
| Organism Name (as deposited) | HMT-127 Staphylococcus hominis SDC3 | ||
| Strain or Isolate | SDC3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus hominis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 180.593 | ||
| Contigs |
|
||
| Total Sequence Length | 2,178,430 (bp) | ||
| GC Percentage | 31.39 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/004/245/GCA_007004245.1_ASM700424v1 | ||
| CDS | 2076 | ||
| Genes | 2194 | ||
| mRNA | 2194 | ||
| misc RNA | 52 | ||
| rRNA | 7 | ||
| tRNA | 58 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.2 % | ||
| CheckM Completeness | 92.82 % | ||
| CheckM Contamination | 1.79 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM700424v1 |
| GenBank Assembly Accession | GCA_007004245.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007004245.1 [NCBI] |
| BioSample | SAMN12211905 [NCBI] |
| BioProject | PRJNA552487 [NCBI] |
| Submitter | University of New Hampshire |
| Submission Date | 2019-07-03T12:28:04.420 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VJMN01 |
| NCBI TaxID | 1290 |
| Isolation Source | desert soil |
| Geo Location | USA: New Mexico, Sevilleta Des |
