Genome Meta Information: Dolosigranulum pigrum 83VPs-KB5 (GCA_007197715.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_007197715.1 | ||
| HOMD Taxon-ID | HMT-0813 | ||
| Species Name (in use by HOMD) | Dolosigranulum pigrum | ||
| Organism Name (as deposited) | HMT-813 Dolosigranulum pigrum 83VPs-KB5 | ||
| Strain or Isolate | 83VPs-KB5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Dolosigranulum; s__Dolosigranulum pigrum |
||
| Sequencing Technology | Oxford Nanopore MiniION; Illumina | ||
| Genome Coverage | 66.1 | ||
| Contigs |
|
||
| Total Sequence Length | 2,082,055 (bp) | ||
| GC Percentage | 39.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/197/715/GCA_007197715.1_ASM719771v1 | ||
| CDS | 1994 | ||
| Genes | 2124 | ||
| mRNA | 2124 | ||
| misc RNA | 61 | ||
| rRNA | 12 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.64 % | ||
| CheckM Completeness | 98.82 % | ||
| CheckM Contamination | 2.03 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM719771v1 |
| GenBank Assembly Accession | GCA_007197715.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_007197715.1 [NCBI] |
| BioSample | SAMN12259797 [NCBI] |
| BioProject | PRJNA554245 [NCBI] |
| Submitter | Statens Serum Institut |
| Submission Date | 2019-07-12T06:55:03.833 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 29394 |
| Isolation Source | |
| Geo Location | Germany: Munster |
