Genome Meta Information: Aggregatibacter actinomycetemcomitans PN_436 (GCA_008085215.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008085215.1 | ||
| HOMD Taxon-ID | HMT-531 | ||
| Species Name (in use by HOMD) | Aggregatibacter actinomycetemcomitans | ||
| Organism Name (as deposited) | HMT-531 Aggregatibacter actinomycetemcomitans PN_436 | ||
| Strain or Isolate | PN_436 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter; s__Aggregatibacter actinomycetemcomitans |
||
| Sequencing Technology | Illumina | ||
| Genome Coverage | 98.0x | ||
| Contigs |
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| Total Sequence Length | 2,079,715 (bp) | ||
| GC Percentage | 44.4 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/085/215/GCA_008085215.1_ASM808521v1 | ||
| CDS | 1996 | ||
| Genes | 2106 | ||
| mRNA | 2106 | ||
| misc RNA | 59 | ||
| rRNA | 4 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.11 % | ||
| CheckM Completeness | 99.66 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.03 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM808521v1 |
| GenBank Assembly Accession | GCA_008085215.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008085215.1 [NCBI] |
| BioSample | SAMN12492032 [NCBI] |
| BioProject | PRJNA560478 [NCBI] |
| Submitter | Department of Molecular Medicine (MOMA) - Aarhus University Hospital |
| Submission Date | 2019-08-03T16:18:04.240 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VSDX01 |
| NCBI TaxID | 714 |
| Isolation Source | Bacteremia |
| Geo Location | Denmark |
