Genome Meta Information: Corynebacterium jeikeium ICIS 5 (GCA_008368695.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008368695.1 | ||
| HOMD Taxon-ID | HMT-0047 | ||
| Species Name (in use by HOMD) | Corynebacterium jeikeium | ||
| Organism Name (as deposited) | HMT-031 Corynebacterium amycolatum ICIS 5 | ||
| Strain or Isolate | ICIS 5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium jeikeium_D |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 278 | ||
| Contigs |
|
||
| Total Sequence Length | 2,474,151 (bp) | ||
| GC Percentage | 58.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/368/695/GCA_008368695.1_ASM836869v1 | ||
| CDS | 2107 | ||
| Genes | 2200 | ||
| mRNA | 2200 | ||
| misc RNA | 14 | ||
| rRNA | 24 | ||
| tRNA | 54 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.85 % | ||
| CheckM Completeness | 99.49 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM836869v1 |
| GenBank Assembly Accession | GCA_008368695.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008368695.1 [NCBI] |
| BioSample | SAMN11391704 [NCBI] |
| BioProject | PRJNA339674 [NCBI] |
| Submitter | Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences |
| Submission Date | 2019-04-10T14:24:04.217 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SSOR01 |
| NCBI TaxID | 43765 |
| Isolation Source | female urogenital tract |
| Geo Location | Russia |
