Genome Meta Information: Corynebacterium striatum LK37 (GCA_008373895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008373895.1 | ||
| HOMD Taxon-ID | HMT-0072 | ||
| Species Name (in use by HOMD) | Corynebacterium striatum | ||
| Organism Name (as deposited) | HMT-072 Corynebacterium striatum LK37 | ||
| Strain or Isolate | LK37 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium striatum |
||
| Sequencing Technology | Illumina NextSeq 500 | ||
| Genome Coverage | 2500 | ||
| Contigs |
|
||
| Total Sequence Length | 2,824,107 (bp) | ||
| GC Percentage | 59.45 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/373/895/GCA_008373895.1_ASM837389v1 | ||
| CDS | 2604 | ||
| Genes | 2673 | ||
| mRNA | 2673 | ||
| misc RNA | 9 | ||
| rRNA | 4 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.72 % | ||
| CheckM Completeness | 99.9 % | ||
| CheckM Contamination | 0.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM837389v1 |
| GenBank Assembly Accession | GCA_008373895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008373895.1 [NCBI] |
| BioSample | SAMN10134347 [NCBI] |
| BioProject | PRJNA506988 [NCBI] |
| Submitter | University of Pennsylvania |
| Submission Date | 2018-09-26T16:38:05.070 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | RAQW01 |
| NCBI TaxID | 43770 |
| Isolation Source | foot ulcer |
| Geo Location | USA |
