Genome Meta Information: Haemophilus aegyptius HE40/F3043 (GCA_008586765.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008586765.1 | ||
| HOMD Taxon-ID | HMT-0535 | ||
| Species Name (in use by HOMD) | Haemophilus aegyptius | ||
| Organism Name (as deposited) | HMT-535 Haemophilus aegyptius HE40/F3043 | ||
| Strain or Isolate | HE40/F3043 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 118.3 | ||
| Contigs |
|
||
| Total Sequence Length | 2,000,194 (bp) | ||
| GC Percentage | 38.23 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/586/765/GCA_008586765.1_ASM858676v1 | ||
| CDS | 2298 | ||
| Genes | 2418 | ||
| mRNA | 2418 | ||
| misc RNA | 43 | ||
| rRNA | 19 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 96.95 % | ||
| CheckM Completeness | 80.13 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM858676v1 |
| GenBank Assembly Accession | GCA_008586765.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008586765.1 [NCBI] |
| BioSample | SAMN12687938 [NCBI] |
| BioProject | PRJNA563784 [NCBI] |
| Submitter | Griffith University |
| Submission Date | 2019-09-04T02:53:05.647 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 725 |
| Isolation Source | Conjunctiva |
| Geo Location | Brazil: Guariba |
