Genome Meta Information: Actinomyces johnsonii CCUG 34287T (GCA_008693165.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008693165.1 | ||
| HOMD Taxon-ID | HMT-849 | ||
| Species Name (in use by HOMD) | Actinomyces johnsonii | ||
| Organism Name (as deposited) | HMT-849 Actinomyces johnsonii CCUG 34287T | ||
| Strain or Isolate | CCUG 34287T | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces johnsonii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 309.5x | ||
| Contigs |
|
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| Total Sequence Length | 3,357,062 (bp) | ||
| GC Percentage | 67.52 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/693/165/GCA_008693165.1_ASM869316v1 | ||
| CDS | 2791 | ||
| Genes | 2863 | ||
| mRNA | 2863 | ||
| misc RNA | 16 | ||
| rRNA | 3 | ||
| tRNA | 52 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.95 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.25 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM869316v1 |
| GenBank Assembly Accession | GCA_008693165.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008693165.1 [NCBI] |
| BioSample | SAMN12771117 [NCBI] |
| BioProject | PRJNA563568 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2019-09-17T05:21:06.390 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VXKM01 |
| NCBI TaxID | 544581 |
| Isolation Source | gingival crevice |
| Geo Location | Missing |
