Genome Meta Information: Streptococcus parasanguinis LPB0220 (GCA_008727815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008727815.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis LPB0220 | ||
| Strain or Isolate | LPB0220 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus sp008727815 |
||
| Sequencing Technology | PacBio | ||
| Genome Coverage | 475.69 | ||
| Contigs |
|
||
| Total Sequence Length | 2,133,380 (bp) | ||
| GC Percentage | 42.12 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/727/815/GCA_008727815.1_ASM872781v1 | ||
| CDS | 2001 | ||
| Genes | 2107 | ||
| mRNA | 2107 | ||
| misc RNA | 31 | ||
| rRNA | 12 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.32 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM872781v1 |
| GenBank Assembly Accession | GCA_008727815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008727815.1 [NCBI] |
| BioSample | SAMN12769544 [NCBI] |
| BioProject | PRJNA565653 [NCBI] |
| Submitter | Korea University |
| Submission Date | 2019-09-16T20:06:03.560 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2610896 |
| Isolation Source | respiratory tract |
| Geo Location | South Korea |
