Genome Meta Information: Staphylococcus lugdunensis SL29 (GCA_008728715.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008728715.1 | ||
| HOMD Taxon-ID | HMT-0128 | ||
| Species Name (in use by HOMD) | Staphylococcus lugdunensis | ||
| Organism Name (as deposited) | HMT-128 Staphylococcus lugdunensis SL29 | ||
| Strain or Isolate | SL29 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus lugdunensis |
||
| Sequencing Technology | Pacbio RS | ||
| Genome Coverage | 367 | ||
| Contigs |
|
||
| Total Sequence Length | 2,660,394 (bp) | ||
| GC Percentage | 33.88 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/728/715/GCA_008728715.1_ASM872871v1 | ||
| CDS | 2480 | ||
| Genes | 2648 | ||
| mRNA | 2648 | ||
| misc RNA | 87 | ||
| rRNA | 19 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.54 % | ||
| CheckM Completeness | 99.1 % | ||
| CheckM Contamination | 0.34 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM872871v1 |
| GenBank Assembly Accession | GCA_008728715.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008728715.1 [NCBI] |
| BioSample | SAMN12283062 [NCBI] |
| BioProject | PRJNA554757 [NCBI] |
| Submitter | EA2656 GRAM |
| Submission Date | 2019-07-16T05:11:10.330 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 28035 |
| Isolation Source | vascular prosthesis infection |
| Geo Location | France: Rouen |
