Genome Meta Information: Fusobacterium necrophorum CCUG 42162 (GCA_008801775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008801775.1 | ||
| HOMD Taxon-ID | HMT-0690 | ||
| Species Name (in use by HOMD) | Fusobacterium necrophorum | ||
| Organism Name (as deposited) | HMT-690 Fusobacterium necrophorum CCUG 42162 | ||
| Strain or Isolate | CCUG 42162 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_C; s__Fusobacterium_C necrophorum |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 189.89 | ||
| Contigs |
|
||
| Total Sequence Length | 2,124,940 (bp) | ||
| GC Percentage | 34.93 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/801/775/GCA_008801775.1_ASM880177v1 | ||
| CDS | 2021 | ||
| Genes | 2097 | ||
| mRNA | 2097 | ||
| misc RNA | 18 | ||
| rRNA | 7 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.99 % | ||
| CheckM Completeness | 93.08 % | ||
| CheckM Contamination | 4.98 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM880177v1 |
| GenBank Assembly Accession | GCA_008801775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008801775.1 [NCBI] |
| BioSample | SAMN12697574 [NCBI] |
| BioProject | PRJNA563568 [NCBI] |
| Submitter | University of Gothenburg - CCUG |
| Submission Date | 2019-09-05T05:47:05.640 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | VZOZ01 |
| NCBI TaxID | 143387 |
| Isolation Source | liver abscess |
| Geo Location | Missing |
