Genome Meta Information: Haemophilus influenzae PittGG (GCA_008831525.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008831525.1 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae PittGG | ||
| Strain or Isolate | PittGG | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 214 | ||
| Contigs |
|
||
| Total Sequence Length | 1,887,343 (bp) | ||
| GC Percentage | 38.01 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/831/525/GCA_008831525.1_ASM883152v1 | ||
| CDS | 1800 | ||
| Genes | 1911 | ||
| mRNA | 1911 | ||
| misc RNA | 35 | ||
| rRNA | 19 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.31 % | ||
| CheckM Completeness | 97.68 % | ||
| CheckM Contamination | 0.16 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM883152v1 |
| GenBank Assembly Accession | GCA_008831525.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008831525.1 [NCBI] |
| BioSample | SAMN12877006 [NCBI] |
| BioProject | PRJNA575052 [NCBI] |
| Submitter | Drexel |
| Submission Date | 2019-09-30T18:06:22.783 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | middle ear fluid |
| Geo Location | USA: Pittsburgh, PA |
