Genome Meta Information: Lacticaseibacillus casei BIO5773 (GCA_008868595.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_008868595.1 | ||
| HOMD Taxon-ID | HMT-0568 | ||
| Species Name (in use by HOMD) | Lacticaseibacillus casei | ||
| Organism Name (as deposited) | HMT-568 Lacticaseibacillus casei BIO5773 | ||
| Strain or Isolate | BIO5773 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus; s__Lacticaseibacillus casei |
||
| Sequencing Technology | Illumina Miseq | ||
| Genome Coverage | 91 | ||
| Contigs |
|
||
| Total Sequence Length | 3,084,211 (bp) | ||
| GC Percentage | 47.94 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/868/595/GCA_008868595.1_ASM886859v1 | ||
| CDS | 2848 | ||
| Genes | 2939 | ||
| mRNA | 2939 | ||
| misc RNA | 28 | ||
| rRNA | 6 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.89 % | ||
| CheckM Completeness | 94.38 % | ||
| CheckM Contamination | 4.3 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM886859v1 |
| GenBank Assembly Accession | GCA_008868595.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_008868595.1 [NCBI] |
| BioSample | SAMN12856536 [NCBI] |
| BioProject | PRJNA574342 [NCBI] |
| Submitter | Bioprox |
| Submission Date | 2019-09-26T10:24:03.330 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | WBOC01 |
| NCBI TaxID | 1582 |
| Isolation Source | tissue |
| Geo Location | missing |
