Genome Meta Information: Yersinia pestis SCPM-O-B-6530 (GCA_009295985.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009295985.1 | ||
| HOMD Taxon-ID | HMT-0827 | ||
| Species Name (in use by HOMD) | Yersinia pestis | ||
| Organism Name (as deposited) | HMT-827 Yersinia pestis SCPM-O-B-6530 | ||
| Strain or Isolate | SCPM-O-B-6530 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia; s__Yersinia pestis |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 258.1 | ||
| Contigs |
|
||
| Total Sequence Length | 4,783,760 (bp) | ||
| GC Percentage | 47.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/295/985/GCA_009295985.1_ASM929598v1 | ||
| CDS | 4245 | ||
| Genes | 4589 | ||
| mRNA | 4589 | ||
| misc RNA | 248 | ||
| rRNA | 22 | ||
| tRNA | 73 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.94 % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0.86 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM929598v1 |
| GenBank Assembly Accession | GCA_009295985.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009295985.1 [NCBI] |
| BioSample | SAMN07176224 [NCBI] |
| BioProject | PRJNA269675 [NCBI] |
| Submitter | SRCAMB |
| Submission Date | 2017-05-30T09:37:03.673 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1234662 |
| Isolation Source | missing |
| Geo Location | missing |
