Genome Meta Information: Streptococcus mitis SM50 (GCA_009496905.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009496905.1 | ||
| HOMD Taxon-ID | HMT-0677 | ||
| Species Name (in use by HOMD) | Streptococcus mitis | ||
| Organism Name (as deposited) | HMT-677 Streptococcus mitis SM50 | ||
| Strain or Isolate | SM50 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mitis_CG |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 49.28 | ||
| Contigs |
|
||
| Total Sequence Length | 1,894,166 (bp) | ||
| GC Percentage | 40.1 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/496/905/GCA_009496905.1_ASM949690v1 | ||
| CDS | 1793 | ||
| Genes | 1895 | ||
| mRNA | 1895 | ||
| misc RNA | 46 | ||
| rRNA | 6 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 93.41 % | ||
| CheckM Completeness | 99.43 % | ||
| CheckM Contamination | 0.52 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM949690v1 |
| GenBank Assembly Accession | GCA_009496905.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009496905.1 [NCBI] |
| BioSample | SAMN13105985 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2019-10-23T20:38:05.023 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | WIJB01 |
| NCBI TaxID | 28037 |
| Isolation Source | |
| Geo Location | USA: Maywood, IL |
