Genome Meta Information: Variovorax paradoxus 5C-2 (GCA_009498455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009498455.1 | ||
| HOMD Taxon-ID | HMT-0717 | ||
| Species Name (in use by HOMD) | Variovorax paradoxus | ||
| Organism Name (as deposited) | HMT-717 Variovorax paradoxus 5C-2 | ||
| Strain or Isolate | 5C-2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Variovorax; s__Variovorax paradoxus_H |
||
| Sequencing Technology | Oxford Nanopore; Illumina MiSeq | ||
| Genome Coverage | 311 | ||
| Contigs |
|
||
| Total Sequence Length | 7,288,087 (bp) | ||
| GC Percentage | 67.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/498/455/GCA_009498455.1_ASM949845v1 | ||
| CDS | 6688 | ||
| Genes | 6784 | ||
| mRNA | 6784 | ||
| misc RNA | 27 | ||
| rRNA | 6 | ||
| tRNA | 62 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 87.33 % | ||
| CheckM Completeness | 95.2 % | ||
| CheckM Contamination | 7.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM949845v1 |
| GenBank Assembly Accession | GCA_009498455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009498455.1 [NCBI] |
| BioSample | SAMN13140870 [NCBI] |
| BioProject | PRJNA579941 [NCBI] |
| Submitter | Kazan Institute of Biochemistry and Biophysics RAS |
| Submission Date | 2019-10-28T10:11:03.530 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 34073 |
| Isolation Source | soil |
| Geo Location | Russia |
