Genome Meta Information: Streptococcus parasanguinis BIOML-A3 (GCA_009717815.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009717815.1 | ||
| HOMD Taxon-ID | HMT-0411 | ||
| Species Name (in use by HOMD) | Streptococcus parasanguinis | ||
| Organism Name (as deposited) | HMT-411 Streptococcus parasanguinis BIOML-A3 | ||
| Strain or Isolate | BIOML-A3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus parasanguinis_F |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 259.859 | ||
| Contigs |
|
||
| Total Sequence Length | 2,107,852 (bp) | ||
| GC Percentage | 42.15 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/717/815/GCA_009717815.1_ASM971781v1 | ||
| CDS | 2000 | ||
| Genes | 2085 | ||
| mRNA | 2085 | ||
| misc RNA | 37 | ||
| rRNA | 3 | ||
| tRNA | 44 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.02 % | ||
| CheckM Completeness | 98.24 % | ||
| CheckM Contamination | 1.07 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM971781v1 |
| GenBank Assembly Accession | GCA_009717815.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009717815.1 [NCBI] |
| BioSample | SAMN11946358 [NCBI] |
| BioProject | PRJNA544527 [NCBI] |
| Submitter | Massachusetts Institute of Technology |
| Submission Date | 2019-06-03T16:41:16.013 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | WMZH01 |
| NCBI TaxID | 1318 |
| Isolation Source | |
| Geo Location | USA:Boston |
