Genome Meta Information: Capnocytophaga leadbetteri FDAARGOS_737 (GCA_009730375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009730375.1 | ||
| HOMD Taxon-ID | HMT-0329 | ||
| Species Name (in use by HOMD) | Capnocytophaga leadbetteri | ||
| Organism Name (as deposited) | HMT-329 Capnocytophaga leadbetteri FDAARGOS_737 | ||
| Strain or Isolate | FDAARGOS_737 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga leadbetteri |
||
| Sequencing Technology | Pacbio; Illumina | ||
| Genome Coverage | 1442.04 | ||
| Contigs |
|
||
| Total Sequence Length | 2,652,717 (bp) | ||
| GC Percentage | 40.07 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/730/375/GCA_009730375.1_ASM973037v1 | ||
| CDS | 2349 | ||
| Genes | 2416 | ||
| mRNA | 2416 | ||
| misc RNA | 9 | ||
| rRNA | 8 | ||
| tRNA | 49 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.25 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM973037v1 |
| GenBank Assembly Accession | GCA_009730375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009730375.1 [NCBI] |
| BioSample | SAMN11056452 [NCBI] |
| BioProject | PRJNA231221 [NCBI] |
| Submitter | US Food and Drug Administration |
| Submission Date | 2019-03-05T13:52:07.623 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2545799 |
| Isolation Source | human oral cavity |
| Geo Location | USA:VA |
