Genome Meta Information: Streptococcus mutans NCH105 (GCA_009738105.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009738105.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans NCH105 | ||
| Strain or Isolate | NCH105 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 175 | ||
| Contigs |
|
||
| Total Sequence Length | 2,028,032 (bp) | ||
| GC Percentage | 36.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/738/105/GCA_009738105.1_ASM973810v1 | ||
| CDS | 1887 | ||
| Genes | 2010 | ||
| mRNA | 2010 | ||
| misc RNA | 42 | ||
| rRNA | 15 | ||
| tRNA | 65 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.32 % | ||
| CheckM Completeness | 98.66 % | ||
| CheckM Contamination | 0.49 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM973810v1 |
| GenBank Assembly Accession | GCA_009738105.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009738105.1 [NCBI] |
| BioSample | SAMN12797732 [NCBI] |
| BioProject | PRJNA573065 [NCBI] |
| Submitter | UConn Health |
| Submission Date | 2019-09-20T12:18:03.573 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1309 |
| Isolation Source | |
| Geo Location | USA:Charlotte |
