Genome Meta Information: Streptococcus salivarius ICDC3 (GCA_009738245.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009738245.1 | ||
| HOMD Taxon-ID | HMT-0755 | ||
| Species Name (in use by HOMD) | Streptococcus salivarius | ||
| Organism Name (as deposited) | HMT-755 Streptococcus salivarius ICDC3 | ||
| Strain or Isolate | ICDC3 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus salivarius_D |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 501 | ||
| Contigs |
|
||
| Total Sequence Length | 2,193,173 (bp) | ||
| GC Percentage | 39.83 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/738/245/GCA_009738245.1_ASM973824v1 | ||
| CDS | 1976 | ||
| Genes | 2111 | ||
| mRNA | 2111 | ||
| misc RNA | 48 | ||
| rRNA | 18 | ||
| tRNA | 68 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 95.98 % | ||
| CheckM Completeness | 97.58 % | ||
| CheckM Contamination | 2.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM973824v1 |
| GenBank Assembly Accession | GCA_009738245.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009738245.1 [NCBI] |
| BioSample | SAMN06066191 [NCBI] |
| BioProject | PRJNA355057 [NCBI] |
| Submitter | National Institute for Communicable Disease Control and Prevention, China CDC |
| Submission Date | 2016-11-28T21:04:05.260 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1304 |
| Isolation Source | 4-6 years old child with healthy oral |
| Geo Location | China:Changping, Beijing |
