Genome Meta Information: Stutzerimonas stutzeri PM101005 (GCA_009789555.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009789555.1 | ||
| HOMD Taxon-ID | HMT-0477 | ||
| Species Name (in use by HOMD) | Stutzerimonas stutzeri | ||
| Organism Name (as deposited) | HMT-477 Stutzerimonas stutzeri PM101005 | ||
| Strain or Isolate | PM101005 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas; s__Stutzerimonas stutzeri_R |
||
| Sequencing Technology | PacBio RSII; Illumina HiSeq | ||
| Genome Coverage | 206 | ||
| Contigs |
|
||
| Total Sequence Length | 4,948,328 (bp) | ||
| GC Percentage | 61.89 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/789/555/GCA_009789555.1_ASM978955v1 | ||
| CDS | 4595 | ||
| Genes | 4717 | ||
| mRNA | 4717 | ||
| misc RNA | 48 | ||
| rRNA | 12 | ||
| tRNA | 61 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 82.95 % | ||
| CheckM Completeness | 98.49 % | ||
| CheckM Contamination | 2.53 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM978955v1 |
| GenBank Assembly Accession | GCA_009789555.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009789555.1 [NCBI] |
| BioSample | SAMN13555502 [NCBI] |
| BioProject | PRJNA595440 [NCBI] |
| Submitter | Korea Research Institute of Bioscience and Biotechnology |
| Submission Date | 2019-12-12T23:34:03.840 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 316 |
| Isolation Source | particulate matter |
| Geo Location | South Korea: Daejeon |
