Genome Meta Information: Staphylococcus hominis APC 3824 (GCA_009897275.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_009897275.1 | ||
| HOMD Taxon-ID | HMT-0127 | ||
| Species Name (in use by HOMD) | Staphylococcus hominis | ||
| Organism Name (as deposited) | HMT-127 Staphylococcus hominis APC 3824 | ||
| Strain or Isolate | APC 3824 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus hominis |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 39.2495 | ||
| Contigs |
|
||
| Total Sequence Length | 2,292,997 (bp) | ||
| GC Percentage | 31.27 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/897/275/GCA_009897275.1_ASM989727v1 | ||
| CDS | 2215 | ||
| Genes | 2341 | ||
| mRNA | 2341 | ||
| misc RNA | 57 | ||
| rRNA | 9 | ||
| tRNA | 59 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.15 % | ||
| CheckM Completeness | 90.81 % | ||
| CheckM Contamination | 5.29 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM989727v1 |
| GenBank Assembly Accession | GCA_009897275.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_009897275.1 [NCBI] |
| BioSample | SAMN10929329 [NCBI] |
| BioProject | PRJNA521309 [NCBI] |
| Submitter | University College Cork |
| Submission Date | 2019-02-14T07:24:05.447 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | SHFC01 |
| NCBI TaxID | 1290 |
| Isolation Source | milk |
| Geo Location | Ireland: Cork |
