Genome Meta Information: Escherichia coli PapM-32-1 (GCA_011045235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_011045235.1 | ||
| HOMD Taxon-ID | HMT-0574 | ||
| Species Name (in use by HOMD) | Escherichia coli | ||
| Organism Name (as deposited) | HMT-574 Escherichia coli PapM-32-1 | ||
| Strain or Isolate | PapM-32-1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; s__Escherichia coli |
||
| Sequencing Technology | Oxford Nanopore MiniION | ||
| Genome Coverage | 1 | ||
| Contigs |
|
||
| Total Sequence Length | 4,866,137 (bp) | ||
| GC Percentage | 50.57 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/045/235/GCA_011045235.1_ASM1104523v1 | ||
| CDS | 4419 | ||
| Genes | 4793 | ||
| mRNA | 4793 | ||
| misc RNA | 264 | ||
| rRNA | 22 | ||
| tRNA | 87 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.56 % | ||
| CheckM Completeness | 99.46 % | ||
| CheckM Contamination | 0.73 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1104523v1 |
| GenBank Assembly Accession | GCA_011045235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_011045235.1 [NCBI] |
| BioSample | SAMN13978645 [NCBI] |
| BioProject | PRJNA604701 [NCBI] |
| Submitter | Quadram Institute Biosciences |
| Submission Date | 2020-02-04T07:21:06.036 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 562 |
| Isolation Source | stool |
| Geo Location | Gambia |
