Genome Meta Information: Cutibacterium acnes SZ2 (GCA_011399455.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_011399455.1 | ||
| HOMD Taxon-ID | HMT-0530 | ||
| Species Name (in use by HOMD) | Cutibacterium acnes | ||
| Organism Name (as deposited) | HMT-530 Cutibacterium acnes SZ2 | ||
| Strain or Isolate | SZ2 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Propionibacteriales;f__Propionibacteriaceae;g__Cutibacterium; s__Cutibacterium acnes |
||
| Sequencing Technology | Illumina NextSeq500; Oxford Nanopore Technologies GridION | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,504,552 (bp) | ||
| GC Percentage | 60.02 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/399/455/GCA_011399455.1_ASM1139945v1 | ||
| CDS | 2312 | ||
| Genes | 2391 | ||
| mRNA | 2391 | ||
| misc RNA | 22 | ||
| rRNA | 9 | ||
| tRNA | 46 | ||
| tmRNA | 2 | ||
| ANI (Average Nucluotide Identity) | 99.94 % | ||
| CheckM Completeness | 97.29 % | ||
| CheckM Contamination | 1.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1139945v1 |
| GenBank Assembly Accession | GCA_011399455.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_011399455.1 [NCBI] |
| BioSample | SAMN14167121 [NCBI] |
| BioProject | PRJNA608176 [NCBI] |
| Submitter | Keio University |
| Submission Date | 2020-02-23T13:57:03.670 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1747 |
| Isolation Source | Non-surgical site of the back of an orthopedic surgery patient |
| Geo Location | Japan:Shizuoka, Shizuoka |
