Genome Meta Information: Corynebacterium striatum CSc20 (GCA_011682935.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_011682935.1 | ||
| HOMD Taxon-ID | HMT-0072 | ||
| Species Name (in use by HOMD) | Corynebacterium striatum | ||
| Organism Name (as deposited) | HMT-072 Corynebacterium striatum CSc20 | ||
| Strain or Isolate | CSc20 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium; s__Corynebacterium striatum |
||
| Sequencing Technology | Illumina NovaSeq | ||
| Genome Coverage | 100 | ||
| Contigs |
|
||
| Total Sequence Length | 2,981,342 (bp) | ||
| GC Percentage | 59.13 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/682/935/GCA_011682935.1_ASM1168293v1 | ||
| CDS | 2817 | ||
| Genes | 2890 | ||
| mRNA | 2890 | ||
| misc RNA | 10 | ||
| rRNA | 7 | ||
| tRNA | 55 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.6 % | ||
| CheckM Completeness | 99.49 % | ||
| CheckM Contamination | 0.62 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1168293v1 |
| GenBank Assembly Accession | GCA_011682935.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_011682935.1 [NCBI] |
| BioSample | SAMN11811890 [NCBI] |
| BioProject | PRJNA544998 [NCBI] |
| Submitter | China CDC |
| Submission Date | 2019-05-21T21:57:06.773 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | VCPB01 |
| NCBI TaxID | 43770 |
| Isolation Source | sputum |
| Geo Location | China: Beijing |
