Genome Meta Information: Streptococcus pseudopneumoniae CCUG 72040 (GCA_011714665.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_011714665.1 | ||
| HOMD Taxon-ID | HMT-0425 | ||
| Species Name (in use by HOMD) | Streptococcus pseudopneumoniae | ||
| Organism Name (as deposited) | HMT-425 Streptococcus pseudopneumoniae CCUG 72040 | ||
| Strain or Isolate | CCUG 72040 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus pseudopneumoniae |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 956 | ||
| Contigs |
|
||
| Total Sequence Length | 2,175,171 (bp) | ||
| GC Percentage | 39.85 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/714/665/GCA_011714665.1_ASM1171466v1 | ||
| CDS | 2123 | ||
| Genes | 2230 | ||
| mRNA | 2230 | ||
| misc RNA | 63 | ||
| rRNA | 3 | ||
| tRNA | 40 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.23 % | ||
| CheckM Completeness | 96.99 % | ||
| CheckM Contamination | 2.58 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1171466v1 |
| GenBank Assembly Accession | GCA_011714665.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_011714665.1 [NCBI] |
| BioSample | SAMN10587713 [NCBI] |
| BioProject | PRJNA302716 [NCBI] |
| Submitter | TAILORED-Treatment project |
| Submission Date | 2018-12-13T07:32:07.110 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | RXXI01 |
| NCBI TaxID | 257758 |
| Isolation Source | sputum |
| Geo Location | Sweden: Boras |
