Genome Meta Information: Streptococcus mutans UAB-39 (GCA_012641775.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012641775.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans UAB-39 | ||
| Strain or Isolate | UAB-39 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina MiSeq | ||
| Genome Coverage | 243.861 | ||
| Contigs |
|
||
| Total Sequence Length | 2,004,916 (bp) | ||
| GC Percentage | 36.68 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/641/775/GCA_012641775.1_ASM1264177v1 | ||
| CDS | 1876 | ||
| Genes | 1960 | ||
| mRNA | 1960 | ||
| misc RNA | 29 | ||
| rRNA | 6 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.25 % | ||
| CheckM Completeness | 97.3 % | ||
| CheckM Contamination | 1.4 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1264177v1 |
| GenBank Assembly Accession | GCA_012641775.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_012641775.1 [NCBI] |
| BioSample | SAMN09101778 [NCBI] |
| BioProject | PRJNA470728 [NCBI] |
| Submitter | University of Alabama at Birmingham |
| Submission Date | 2018-05-09T18:41:34.406 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QYBH01 |
| NCBI TaxID | 1309 |
| Isolation Source | plaque |
| Geo Location | USA: Alabama |
