Genome Meta Information: Streptococcus mutans UAB-9 (GCA_012642235.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012642235.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans UAB-9 | ||
| Strain or Isolate | UAB-9 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina HiSeq 2000 | ||
| Genome Coverage | 26.6844 | ||
| Contigs |
|
||
| Total Sequence Length | 2,114,820 (bp) | ||
| GC Percentage | 36.65 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/642/235/GCA_012642235.1_ASM1264223v1 | ||
| CDS | 1921 | ||
| Genes | 1994 | ||
| mRNA | 1994 | ||
| misc RNA | 25 | ||
| rRNA | 5 | ||
| tRNA | 42 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.16 % | ||
| CheckM Completeness | 96.93 % | ||
| CheckM Contamination | 0.61 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1264223v1 |
| GenBank Assembly Accession | GCA_012642235.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_012642235.1 [NCBI] |
| BioSample | SAMN09101748 [NCBI] |
| BioProject | PRJNA470728 [NCBI] |
| Submitter | University of Alabama at Birmingham |
| Submission Date | 2018-05-09T18:41:33.876 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | QYCE01 |
| NCBI TaxID | 1309 |
| Isolation Source | plaque |
| Geo Location | USA: Alabama |
