Genome Meta Information: Staphylococcus haemolyticus SCAID URN1-2019 (GCA_012955505.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_012955505.1 | ||
| HOMD Taxon-ID | HMT-0120 | ||
| Species Name (in use by HOMD) | Staphylococcus haemolyticus | ||
| Organism Name (as deposited) | HMT-120 Staphylococcus haemolyticus SCAID URN1-2019 | ||
| Strain or Isolate | SCAID URN1-2019 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Staphylococcales;f__Staphylococcaceae;g__Staphylococcus; s__Staphylococcus haemolyticus |
||
| Sequencing Technology | IonTorrent | ||
| Genome Coverage | 19 | ||
| Contigs |
|
||
| Total Sequence Length | 2,256,190 (bp) | ||
| GC Percentage | 33.04 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/955/505/GCA_012955505.1_ASM1295550v1 | ||
| CDS | 2540 | ||
| Genes | 2691 | ||
| mRNA | 2691 | ||
| misc RNA | 79 | ||
| rRNA | 10 | ||
| tRNA | 62 | ||
| tmRNA | 0 | ||
| ANI (Average Nucluotide Identity) | 98.53 % | ||
| CheckM Completeness | 78.84 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1295550v1 |
| GenBank Assembly Accession | GCA_012955505.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14667507 [NCBI] |
| BioProject | PRJNA627194 [NCBI] |
| Submitter | Scientific Center for Anti-infectious Drugs (SCAID) |
| Submission Date | 2020-04-22T03:51:06.003 |
| Assembly Method | |
| Assembly Level | Chromosome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1283 |
| Isolation Source | urine |
| Geo Location | Kazakhstan: Almaty |
