Genome Meta Information: Fusobacterium polymorphum Fn12230 (GCA_013137915.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013137915.1 | ||
| HOMD Taxon-ID | HMT-0202 | ||
| Species Name (in use by HOMD) | Fusobacterium polymorphum | ||
| Organism Name (as deposited) | HMT-202 Fusobacterium polymorphum Fn12230 | ||
| Strain or Isolate | Fn12230 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium; s__Fusobacterium polymorphum |
||
| Sequencing Technology | Illumina HiSeq; PacBio | ||
| Genome Coverage | 350 | ||
| Contigs |
|
||
| Total Sequence Length | 2,473,944 (bp) | ||
| GC Percentage | 26.96 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/137/915/GCA_013137915.1_ASM1313791v1 | ||
| CDS | 2394 | ||
| Genes | 2483 | ||
| mRNA | 2483 | ||
| misc RNA | 25 | ||
| rRNA | 15 | ||
| tRNA | 48 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 92.39 % | ||
| CheckM Completeness | 99.06 % | ||
| CheckM Contamination | 1.21 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1313791v1 |
| GenBank Assembly Accession | GCA_013137915.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013137915.1 [NCBI] |
| BioSample | SAMN14918738 [NCBI] |
| BioProject | PRJNA632750 [NCBI] |
| Submitter | Columbia University |
| Submission Date | 2020-05-14T09:56:04.750 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 851 |
| Isolation Source | oral |
| Geo Location | not collected |
