Genome Meta Information: Streptococcus thermophilus CS18 (GCA_013307285.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013307285.1 | ||
| HOMD Taxon-ID | HMT-0152 | ||
| Species Name (in use by HOMD) | Streptococcus thermophilus | ||
| Organism Name (as deposited) | HMT-152 Streptococcus thermophilus CS18 | ||
| Strain or Isolate | CS18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus thermophilus |
||
| Sequencing Technology | Illumina; PacBio | ||
| Genome Coverage | 2552 | ||
| Contigs |
|
||
| Total Sequence Length | 1,858,890 (bp) | ||
| GC Percentage | 39.08 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/307/285/GCA_013307285.1_ASM1330728v1 | ||
| CDS | 1941 | ||
| Genes | 2104 | ||
| mRNA | 2104 | ||
| misc RNA | 77 | ||
| rRNA | 18 | ||
| tRNA | 67 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.71 % | ||
| CheckM Completeness | 97.72 % | ||
| CheckM Contamination | 0.76 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 4 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1330728v1 |
| GenBank Assembly Accession | GCA_013307285.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013307285.1 [NCBI] |
| BioSample | SAMN09635157 [NCBI] |
| BioProject | PRJNA480323 [NCBI] |
| Submitter | harbin institute of technology |
| Submission Date | 2018-07-09T21:47:04.343 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1308 |
| Isolation Source | traditional fermented milk |
| Geo Location | China |
