Genome Meta Information: Gardnerella swidsinskii UMB1698 (GCA_013315145.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013315145.1 | ||
| HOMD Taxon-ID | HMT-0868 | ||
| Species Name (in use by HOMD) | Gardnerella swidsinskii | ||
| Organism Name (as deposited) | HMT-868 Gardnerella swidsinskii UMB1698 | ||
| Strain or Isolate | UMB1698 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Bifidobacteriaceae;g__Bifidobacterium; s__Bifidobacterium swidsinskii |
||
| Sequencing Technology | Illumina HiSeq | ||
| Genome Coverage | 420 | ||
| Contigs |
|
||
| Total Sequence Length | 1,586,334 (bp) | ||
| GC Percentage | 41.92 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/315/145/GCA_013315145.1_ASM1331514v1 | ||
| CDS | 1231 | ||
| Genes | 1295 | ||
| mRNA | 1295 | ||
| misc RNA | 15 | ||
| rRNA | 3 | ||
| tRNA | 45 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 98.61 % | ||
| CheckM Completeness | 98.97 % | ||
| CheckM Contamination | 0.13 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1331514v1 |
| GenBank Assembly Accession | GCA_013315145.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013315145.1 [NCBI] |
| BioSample | SAMN15064057 [NCBI] |
| BioProject | PRJNA316969 [NCBI] |
| Submitter | Loyola University Chicago |
| Submission Date | 2020-05-30T21:46:03.940 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JABUHD01 |
| NCBI TaxID | 2792979 |
| Isolation Source | urine |
| Geo Location | USA: Maywood, IL |
