Genome Meta Information: Absconditicoccaceae [G1] bacterium HMT-875 T-B-F_MAG_00004 (GCA_013333295.2)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013333295.2 | ||
| HOMD Taxon-ID | HMT-875 | ||
| Species Name (in use by HOMD) | Absconditicoccaceae [G1] bacterium HMT-875 | ||
| Organism Name (as deposited) | HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 T-B-F_MAG_00004 | ||
| Strain or Isolate | T-B-F_MAG_00004 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345; s__HOT-345 sp013333295 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 50.0x | ||
| Contigs |
|
||
| Total Sequence Length | 912,690 (bp) | ||
| GC Percentage | 35.35 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/295/GCA_013333295.2_ASM1333329v2 | ||
| CDS | 1699 | ||
| Genes | 1740 | ||
| mRNA | 1740 | ||
| misc RNA | 3 | ||
| rRNA | 0 | ||
| tRNA | 37 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 72.49 % | ||
| CheckM Contamination | 1.12 % | ||
| CheckM2 Completeness | 94.29 % | ||
| CheckM2 Contamination | 1.25 % | ||
| Difference
between CheckM and CheckM2 Completeness |
26.1 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1333329v2 |
| GenBank Assembly Accession | GCA_013333295.2 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14602667 [NCBI] |
| BioProject | PRJNA625082 [NCBI] |
| Submitter | Marine Biological Laboratory |
| Submission Date | 2020-04-15T15:40:05.346 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABCPD02 |
| NCBI TaxID | 2044938 |
| Isolation Source | tongue scraping |
| Geo Location | USA: Massachusetts |
