Taxon Table | Genome Table
Genome Meta Information:
Capnocytophaga
leadbetteri
P-B-M_MAG_00008 (GCA_013333705.2)
| HOMD Genome-ID |
GCA_013333705.2
|
| HOMD Taxon-ID |
HMT-0329
|
| Species Name (in use by HOMD) |
Capnocytophaga leadbetteri
|
| Organism Name (as deposited) |
HMT-329 Capnocytophaga leadbetteri P-B-M_MAG_00008
|
| Strain or Isolate |
P-B-M_MAG_00008
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;
s__Capnocytophaga leadbetteri_A |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
50
|
| Contigs |
Number of Contigs: 133
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,251,100 (bp) |
| GC Percentage |
40.41
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/333/705/GCA_013333705.2_ASM1333370v2
|
| CDS |
2004
|
| Genes |
2043
|
| mRNA |
2043
|
| misc RNA |
4
|
| rRNA |
0
|
| tRNA |
34
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
%
|
| CheckM Completeness |
89.99 %
|
| CheckM Contamination |
1.75 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
Difference
between
CheckM and CheckM2
Completeness |
200.0 %
|
| CRISPR-cas |
No Available
Data |
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1333370v2
|
| GenBank Assembly Accession |
GCA_013333705.2
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
GCF_013333705.1
[NCBI]
|
| BioSample |
SAMN14602646
[NCBI]
|
| BioProject |
PRJNA625082
[NCBI]
|
| Submitter |
Marine Biological Laboratory
|
| Submission Date |
2020-04-15T15:40:05.016
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JABCOI02
|
| NCBI TaxID |
44737
|
| Isolation Source |
dental plaque
|
| Geo Location |
USA: Massachusetts
|
