Genome Meta Information: Haemophilus influenzae 2018-Y40 (GCA_013394405.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394405.1 | ||
| HOMD Taxon-ID | HMT-0641 | ||
| Species Name (in use by HOMD) | Haemophilus influenzae | ||
| Organism Name (as deposited) | HMT-641 Haemophilus influenzae 2018-Y40 | ||
| Strain or Isolate | 2018-Y40 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus; s__Haemophilus influenzae_H |
||
| Sequencing Technology | PacBioRSII | ||
| Genome Coverage | 386 | ||
| Contigs |
|
||
| Total Sequence Length | 1,957,393 (bp) | ||
| GC Percentage | 38.24 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/405/GCA_013394405.1_ASM1339440v1 | ||
| CDS | 1910 | ||
| Genes | 2023 | ||
| mRNA | 2023 | ||
| misc RNA | 36 | ||
| rRNA | 19 | ||
| tRNA | 57 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 97.08 % | ||
| CheckM Completeness | 97.69 % | ||
| CheckM Contamination | 0.02 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339440v1 |
| GenBank Assembly Accession | GCA_013394405.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394405.1 [NCBI] |
| BioSample | SAMD00210359 [NCBI] |
| BioProject | PRJDB9463 [NCBI] |
| Submitter | Tokyo University of Pharmacy and Life Sciences |
| Submission Date | 2020-06-11T01:00:58.320 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 727 |
| Isolation Source | |
| Geo Location | not applicable |
