Genome Meta Information: Actinomyces oris F0496 (GCA_013394715.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394715.1 | ||
| HOMD Taxon-ID | HMT-169 | ||
| Species Name (in use by HOMD) | Actinomyces oris | ||
| Organism Name (as deposited) | HMT-169 Actinomyces oris clade-169 F0496 | ||
| Strain or Isolate | F0496 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces; s__Actinomyces sp915069725 |
||
| Sequencing Technology | PacBio Sequel | ||
| Genome Coverage | 119.0x | ||
| Contigs |
|
||
| Total Sequence Length | 3,040,651 (bp) | ||
| GC Percentage | 68.46 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/715/GCA_013394715.1_ASM1339471v1 | ||
| CDS | 2483 | ||
| Genes | 2558 | ||
| mRNA | 2558 | ||
| misc RNA | 12 | ||
| rRNA | 9 | ||
| tRNA | 53 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 100 % | ||
| CheckM Contamination | 0.47 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 0.06 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339471v1 |
| GenBank Assembly Accession | GCA_013394715.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394715.1 [NCBI] |
| BioSample | SAMN15358582 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2020-06-24T15:28:05.826 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 712116 |
| Isolation Source | sub-gingival plaque oral cavity |
| Geo Location | USA: Boston,MA |
