Genome Meta Information: Capnocytophaga ochracea W10638 (GCA_013394735.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394735.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea W10638 | ||
| Strain or Isolate | W10638 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 161 | ||
| Contigs |
|
||
| Total Sequence Length | 2,837,214 (bp) | ||
| GC Percentage | 39.26 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/735/GCA_013394735.1_ASM1339473v1 | ||
| CDS | 2453 | ||
| Genes | 2522 | ||
| mRNA | 2522 | ||
| misc RNA | 9 | ||
| rRNA | 12 | ||
| tRNA | 47 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 95.74 % | ||
| CheckM Contamination | 0.68 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339473v1 |
| GenBank Assembly Accession | GCA_013394735.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394735.1 [NCBI] |
| BioSample | SAMN15360087 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2020-06-24T16:12:06.160 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 2748316 |
| Isolation Source | sub-gingival plaque oral cavity |
| Geo Location | United Kingdom: London |
