Genome Meta Information: Capnocytophaga ochracea W10654 (GCA_013394785.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013394785.1 | ||
| HOMD Taxon-ID | HMT-0700 | ||
| Species Name (in use by HOMD) | Capnocytophaga ochracea | ||
| Organism Name (as deposited) | HMT-700 Capnocytophaga ochracea W10654 | ||
| Strain or Isolate | W10654 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga; s__Capnocytophaga ochracea |
||
| Sequencing Technology | PacBio RS II | ||
| Genome Coverage | 178 | ||
| Contigs |
|
||
| Total Sequence Length | 2,584,129 (bp) | ||
| GC Percentage | 39.58 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/394/785/GCA_013394785.1_ASM1339478v1 | ||
| CDS | 2158 | ||
| Genes | 2224 | ||
| mRNA | 2224 | ||
| misc RNA | 7 | ||
| rRNA | 12 | ||
| tRNA | 46 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 97.6 % | ||
| CheckM Contamination | 0.39 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | Ambiguous [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1339478v1 |
| GenBank Assembly Accession | GCA_013394785.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013394785.1 [NCBI] |
| BioSample | SAMN15360088 [NCBI] |
| BioProject | PRJNA282954 [NCBI] |
| Submitter | The Forsyth Institute |
| Submission Date | 2020-06-24T16:19:05.246 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABXYW01 |
| NCBI TaxID | 2748317 |
| Isolation Source | sub-gingival plaque oral cavity |
| Geo Location | United Kingdom: London |
