Genome Meta Information: Streptococcus agalactiae S9968 (GCA_013414325.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_013414325.1 | ||
| HOMD Taxon-ID | HMT-0537 | ||
| Species Name (in use by HOMD) | Streptococcus agalactiae | ||
| Organism Name (as deposited) | HMT-537 Streptococcus agalactiae S9968 | ||
| Strain or Isolate | S9968 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus agalactiae |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 376 | ||
| Contigs |
|
||
| Total Sequence Length | 2,201,113 (bp) | ||
| GC Percentage | 35.73 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/414/325/GCA_013414325.1_ASM1341432v1 | ||
| CDS | 2149 | ||
| Genes | 2302 | ||
| mRNA | 2302 | ||
| misc RNA | 51 | ||
| rRNA | 21 | ||
| tRNA | 80 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99 % | ||
| CheckM Completeness | 99.31 % | ||
| CheckM Contamination | 0.23 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1341432v1 |
| GenBank Assembly Accession | GCA_013414325.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_013414325.1 [NCBI] |
| BioSample | SAMN15246708 [NCBI] |
| BioProject | PRJNA639694 [NCBI] |
| Submitter | Korea Atomic Energy Research Institute |
| Submission Date | 2020-06-16T07:34:05.960 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1311 |
| Isolation Source | urine |
| Geo Location | South Korea: Seoul |
