Genome Meta Information: Streptococcus lactarius IMAU 99161 (GCA_014435245.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014435245.1 | ||
| HOMD Taxon-ID | HMT-0948 | ||
| Species Name (in use by HOMD) | Streptococcus lactarius | ||
| Organism Name (as deposited) | HMT-948 Streptococcus lactarius IMAU 99161 | ||
| Strain or Isolate | IMAU 99161 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus lactarius |
||
| Sequencing Technology | PacBio RSII | ||
| Genome Coverage | 500 | ||
| Contigs |
|
||
| Total Sequence Length | 2,062,482 (bp) | ||
| GC Percentage | 41.63 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/435/245/GCA_014435245.1_ASM1443524v1 | ||
| CDS | 1922 | ||
| Genes | 2016 | ||
| mRNA | 2016 | ||
| misc RNA | 40 | ||
| rRNA | 3 | ||
| tRNA | 50 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.02 % | ||
| CheckM Contamination | 0.08 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1443524v1 |
| GenBank Assembly Accession | GCA_014435245.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014435245.1 [NCBI] |
| BioSample | SAMN14379676 [NCBI] |
| BioProject | PRJNA612641 [NCBI] |
| Submitter | Inner Mongolia Agricultural University |
| Submission Date | 2020-03-15T00:39:04.236 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | JAAPAW01 |
| NCBI TaxID | 2710601 |
| Isolation Source | breast milk |
| Geo Location | China: Huhhot |
