Genome Meta Information: Streptococcus mutans B04Sm5 (GCA_014621675.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014621675.1 | ||
| HOMD Taxon-ID | HMT-0686 | ||
| Species Name (in use by HOMD) | Streptococcus mutans | ||
| Organism Name (as deposited) | HMT-686 Streptococcus mutans B04Sm5 | ||
| Strain or Isolate | B04Sm5 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus; s__Streptococcus mutans |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore GridION | ||
| Genome Coverage | 3000 | ||
| Contigs |
|
||
| Total Sequence Length | 2,011,542 (bp) | ||
| GC Percentage | 36.91 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/621/675/GCA_014621675.1_ASM1462167v1 | ||
| CDS | 1869 | ||
| Genes | 1981 | ||
| mRNA | 1981 | ||
| misc RNA | 30 | ||
| rRNA | 15 | ||
| tRNA | 66 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.15 % | ||
| CheckM Completeness | 99.2 % | ||
| CheckM Contamination | 0.35 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 1 Contig [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1462167v1 |
| GenBank Assembly Accession | GCA_014621675.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014621675.1 [NCBI] |
| BioSample | SAMN16014813 [NCBI] |
| BioProject | PRJNA661123 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-09-02T23:03:06.743 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 1225197 |
| Isolation Source | carious lesion |
| Geo Location | USA: New York City |
