Genome Meta Information: Helicobacter pylori JCM 12093 (GCA_014654435.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014654435.1 | ||
| HOMD Taxon-ID | HMT-0812 | ||
| Species Name (in use by HOMD) | Helicobacter pylori | ||
| Organism Name (as deposited) | HMT-812 Helicobacter pylori JCM 12093 | ||
| Strain or Isolate | JCM 12093 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter; s__Helicobacter pylori |
||
| Sequencing Technology | Illumina HiSeq X Ten | ||
| Genome Coverage | 1028 | ||
| Contigs |
|
||
| Total Sequence Length | 1,560,746 (bp) | ||
| GC Percentage | 39.71 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/654/435/GCA_014654435.1_ASM1465443v1 | ||
| CDS | 1544 | ||
| Genes | 1596 | ||
| mRNA | 1596 | ||
| misc RNA | 12 | ||
| rRNA | 3 | ||
| tRNA | 36 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 99.74 % | ||
| CheckM Completeness | 89.33 % | ||
| CheckM Contamination | 0.41 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1465443v1 |
| GenBank Assembly Accession | GCA_014654435.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014654435.1 [NCBI] |
| BioSample | SAMD00245226 [NCBI] |
| BioProject | PRJDB10510 [NCBI] |
| Submitter | WFCC-MIRCEN World Data Centre for Microorganisms (WDCM) |
| Submission Date | 2020-09-05T01:00:59.790 |
| Assembly Method | |
| Assembly Level | Scaffold |
| Sequencing Status | |
| WGS Project | BNAZ01 |
| NCBI TaxID | 210 |
| Isolation Source | |
| Geo Location | not applicable |
