Genome Meta Information: Rothia mucilaginosa CECT30002 (GCA_014894895.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014894895.1 | ||
| HOMD Taxon-ID | HMT-681 | ||
| Species Name (in use by HOMD) | Rothia mucilaginosa | ||
| Organism Name (as deposited) | HMT-681 Rothia mucilaginosa clade-681 CECT30002 | ||
| Strain or Isolate | CECT30002 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Micrococcaceae;g__Rothia; s__Rothia mucilaginosa |
||
| Sequencing Technology | Illumina MiSeq; Oxford Nanopore MinION | ||
| Genome Coverage | 390.0x | ||
| Contigs |
|
||
| Total Sequence Length | 2,351,715 (bp) | ||
| GC Percentage | 59.31 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/894/895/GCA_014894895.1_ASM1489489v1 | ||
| CDS | 2390 | ||
| Genes | 2465 | ||
| mRNA | 2465 | ||
| misc RNA | 13 | ||
| rRNA | 10 | ||
| tRNA | 51 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.38 % | ||
| CheckM Completeness | 95.78 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 89.63 % | ||
| CheckM2 Contamination | 2.87 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1489489v1 |
| GenBank Assembly Accession | GCA_014894895.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014894895.1 [NCBI] |
| BioSample | SAMN15866156 [NCBI] |
| BioProject | PRJNA658327 [NCBI] |
| Submitter | FISABIO |
| Submission Date | 2020-08-20T12:17:03.960 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JACVMJ01 |
| NCBI TaxID | 43675 |
| Isolation Source | |
| Geo Location | Spain: Valencia |
