Genome Meta Information: Haemophilus parainfluenzae M1C142_1 (GCA_014931375.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_014931375.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae M1C142_1 | ||
| Strain or Isolate | M1C142_1 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D sp927911595 |
||
| Sequencing Technology | Illumina MiniSeq; Oxford Nanopore MiniION | ||
| Genome Coverage | 120 | ||
| Contigs |
|
||
| Total Sequence Length | 2,037,540 (bp) | ||
| GC Percentage | 39.6 | ||
| MAG | |||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/931/375/GCA_014931375.1_ASM1493137v1 | ||
| CDS | 1894 | ||
| Genes | 1995 | ||
| mRNA | 1995 | ||
| misc RNA | 25 | ||
| rRNA | 19 | ||
| tRNA | 56 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | 94.34 % | ||
| CheckM Completeness | 98.94 % | ||
| CheckM Contamination | 0.79 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | 2 Contigs [View] [HOMD FTP] | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1493137v1 |
| GenBank Assembly Accession | GCA_014931375.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_014931375.1 [NCBI] |
| BioSample | SAMN16409259 [NCBI] |
| BioProject | PRJNA668428 [NCBI] |
| Submitter | Monash University |
| Submission Date | 2020-10-09T22:21:09.066 |
| Assembly Method | |
| Assembly Level | Complete Genome |
| Sequencing Status | |
| WGS Project | |
| NCBI TaxID | 729 |
| Isolation Source | cough swab |
| Geo Location | Australia: Melbourne |
