Genome Meta Information: Haemophilus parainfluenzae JCVI_38_bin.18 (GCA_015255005.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015255005.1 | ||
| HOMD Taxon-ID | HMT-0718 | ||
| Species Name (in use by HOMD) | Haemophilus parainfluenzae | ||
| Organism Name (as deposited) | HMT-718 Haemophilus parainfluenzae JCVI_38_bin.18 | ||
| Strain or Isolate | JCVI_38_bin.18 | ||
| GTDB (V226) Taxonomy |
d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D; s__Haemophilus_D parainfluenzae_K |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 9.04819 | ||
| Contigs |
|
||
| Total Sequence Length | 1,913,025 (bp) | ||
| GC Percentage | 39.6 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/005/GCA_015255005.1_ASM1525500v1 | ||
| CDS | 1819 | ||
| Genes | 1884 | ||
| mRNA | 1884 | ||
| misc RNA | 22 | ||
| rRNA | 1 | ||
| tRNA | 41 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 99.57 % | ||
| CheckM Contamination | 0.1 % | ||
| CheckM2 Completeness | 0 % | ||
| CheckM2 Contamination | 0 % | ||
| Difference
between CheckM and CheckM2 Completeness |
200.0 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525500v1 |
| GenBank Assembly Accession | GCA_015255005.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015255005.1 [NCBI] |
| BioSample | SAMN14570796 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:00:09.703 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZOX01 |
| NCBI TaxID | 740 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
