Taxon Table | Genome Table
Genome Meta Information:
Fusobacterium
pseudoperiodonticum
JCVI_44_bin.19 (GCA_015255405.1)
| HOMD Genome-ID |
GCA_015255405.1
|
| HOMD Taxon-ID |
HMT-0429
|
| Species Name (in use by HOMD) |
Fusobacterium pseudoperiodonticum
|
| Organism Name (as deposited) |
HMT-429 Fusobacterium pseudoperiodonticum JCVI_44_bin.19
|
| Strain or Isolate |
JCVI_44_bin.19
|
GTDB (V226)
Taxonomy |
d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;
s__Fusobacterium pseudoperiodonticum |
| Sequencing Technology |
Illumina NextSeq
|
| Genome Coverage |
1.97319
|
| Contigs |
Number of Contigs: 188
|
[Open
in Genome Viewer]
[Show
Sequence]
[Linkout to
NCBI]
|
|
| Total Sequence Length |
2,132,266 (bp) |
| GC Percentage |
28.17
|
| MAG |
yes
|
| NCBI FTP URL |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/255/405/GCA_015255405.1_ASM1525540v1
|
| CDS |
1997
|
| Genes |
2046
|
| mRNA |
2046
|
| misc RNA |
25
|
| rRNA |
0
|
| tRNA |
23
|
| tmRNA |
1
|
| ANI (Average Nucluotide Identity) |
93.22 %
|
| CheckM Completeness |
0 %
|
| CheckM Contamination |
0 %
|
| CheckM2 Completeness |
0 %
|
| CheckM2 Contamination |
0 %
|
| CRISPR-cas |
1 Contig
[View]
[HOMD FTP]
|
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
|
| Genome Assembly Name |
ASM1525540v1
|
| GenBank Assembly Accession |
GCA_015255405.1
[NCBI]
[GTDB]
|
| RefSeq Assembly Accession |
[NCBI]
|
| BioSample |
SAMN14570775
[NCBI]
|
| BioProject |
PRJNA624185
[NCBI]
|
| Submitter |
J. Craig Venter Institute
|
| Submission Date |
2020-04-09T20:00:09.373
|
| Assembly Method |
|
| Assembly Level |
Contig
|
| Sequencing Status |
|
| WGS
Project |
JABZOC01
|
| NCBI TaxID |
860
|
| Isolation Source |
saliva
|
| Geo Location |
USA: UCLA School of Dentistry
|
