Genome Meta Information: Absconditicoccaceae [G1] bacterium HMT-875 JCVI_11_bin.10 (GCA_015258205.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015258205.1 | ||
| HOMD Taxon-ID | HMT-875 | ||
| Species Name (in use by HOMD) | Absconditicoccaceae [G1] bacterium HMT-875 | ||
| Organism Name (as deposited) | HMT-875 Absconditicoccaceae [G1] bacterium HMT-875 JCVI_11_bin.10 | ||
| Strain or Isolate | JCVI_11_bin.10 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Patescibacteriota;c__JAEDAM01;o__Absconditabacterales;f__Absconditicoccaceae;g__HOT-345; s__HOT-345 sp013333295 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 1.4x | ||
| Contigs |
|
||
| Total Sequence Length | 897,004 (bp) | ||
| GC Percentage | 35.36 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/258/205/GCA_015258205.1_ASM1525820v1 | ||
| CDS | 1648 | ||
| Genes | 1687 | ||
| mRNA | 1687 | ||
| misc RNA | 3 | ||
| rRNA | 0 | ||
| tRNA | 35 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 79.08 % | ||
| CheckM Contamination | 0 % | ||
| CheckM2 Completeness | 91.18 % | ||
| CheckM2 Contamination | 5.25 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes |
1)
OpenAnvi`o (Interactive)
OpenSVG (Preview)
2) OpenAnvi`o (Interactive) OpenSVG (Preview) |
||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525820v1 |
| GenBank Assembly Accession | GCA_015258205.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | [NCBI] |
| BioSample | SAMN14570635 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:00:07.140 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZIS01 |
| NCBI TaxID | 2044595 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
