Genome Meta Information: Abiotrophia sp. HMT-427 JCVI_32_bin.17 (GCA_015259565.1)
| Genome Characteristics | |||
|---|---|---|---|
| Fields | Values | ||
| HOMD Genome-ID | GCA_015259565.1 | ||
| HOMD Taxon-ID | HMT-427 | ||
| Species Name (in use by HOMD) | Abiotrophia sp. HMT-427 | ||
| Organism Name (as deposited) | HMT-427 Abiotrophia sp. HMT-427 JCVI_32_bin.17 | ||
| Strain or Isolate | JCVI_32_bin.17 | ||
| GTDB (V) Taxonomy |
d__Bacteria;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Abiotrophia; s__Abiotrophia sp001815865 |
||
| Sequencing Technology | Illumina NextSeq | ||
| Genome Coverage | 2.9x | ||
| Contigs |
|
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| Total Sequence Length | 2,016,058 (bp) | ||
| GC Percentage | 46.83 | ||
| MAG | yes | ||
| NCBI FTP URL | ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/259/565/GCA_015259565.1_ASM1525956v1 | ||
| CDS | 1857 | ||
| Genes | 1895 | ||
| mRNA | 1895 | ||
| misc RNA | 20 | ||
| rRNA | 0 | ||
| tRNA | 17 | ||
| tmRNA | 1 | ||
| ANI (Average Nucluotide Identity) | % | ||
| CheckM Completeness | 98.6 % | ||
| CheckM Contamination | 2.01 % | ||
| CheckM2 Completeness | 100 % | ||
| CheckM2 Contamination | 1.42 % | ||
| CRISPR-cas | No Available Data | ||
| Pangenomes | 1) OpenAnvi`o (Interactive) OpenSVG (Preview) | ||
| NCBI Genome Metadata | |
|---|---|
| Fields | Values |
| Genome Assembly Name | ASM1525956v1 |
| GenBank Assembly Accession | GCA_015259565.1 [NCBI] [GTDB] |
| RefSeq Assembly Accession | GCF_015259565.1 [NCBI] |
| BioSample | SAMN14570561 [NCBI] |
| BioProject | PRJNA624185 [NCBI] |
| Submitter | J. Craig Venter Institute |
| Submission Date | 2020-04-09T20:00:05.923 |
| Assembly Method | |
| Assembly Level | Contig |
| Sequencing Status | |
| WGS Project | JABZFW01 |
| NCBI TaxID | 76631 |
| Isolation Source | saliva |
| Geo Location | USA: UCLA School of Dentistry |
